The 2.0 version of rSNPBase

Variant report

Variant rs249411
Chromosome Location chr5:40720695-40720696
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:106 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:40692400-40741200 Weak transcription Primary T killer memory cells from peripheral blood blood
2 chr5:40692800-40721000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
3 chr5:40692800-40733800 Weak transcription Skeletal Muscle Male skeletal muscle
4 chr5:40692800-40735000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
5 chr5:40693600-40727400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr5:40694800-40721000 Weak transcription Thymus Thymus
7 chr5:40695200-40727000 Weak transcription HSMM muscle
8 chr5:40699000-40720800 Weak transcription Primary T helper naive cells from peripheral blood blood
9 chr5:40700800-40720800 Weak transcription Spleen Spleen
10 chr5:40700800-40722200 Weak transcription Lung lung
11 chr5:40701000-40720800 Weak transcription Aorta Aorta
12 chr5:40701000-40722200 Weak transcription Esophagus oesophagus
13 chr5:40705600-40727000 Weak transcription Primary T helper cells PMA-I stimulated --
14 chr5:40706400-40720800 Weak transcription Primary T helper naive cells fromperipheralblood blood
15 chr5:40706400-40721000 Weak transcription Stomach Smooth Muscle stomach
16 chr5:40707600-40720800 Weak transcription Primary hematopoietic stem cells short term culture blood
17 chr5:40709400-40721000 Weak transcription iPS-20b Cell Line embryonic stem cell
18 chr5:40709600-40745000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
19 chr5:40710400-40721400 Weak transcription Rectal Smooth Muscle rectum
20 chr5:40710600-40720800 Weak transcription Fetal Thymus thymus
21 chr5:40710800-40720800 Weak transcription Primary hematopoietic stem cells blood
22 chr5:40711000-40720800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
23 chr5:40711200-40721000 Weak transcription Fetal Muscle Trunk muscle
24 chr5:40712400-40720800 Weak transcription Pancreatic Islets Pancreatic Islet
25 chr5:40712800-40741200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
26 chr5:40713000-40722200 Weak transcription Gastric stomach
27 chr5:40713000-40722200 Weak transcription Pancreas Pancrea
28 chr5:40713200-40740600 Weak transcription Right Ventricle heart
29 chr5:40713600-40721000 Weak transcription Brain Germinal Matrix brain
30 chr5:40713600-40734800 Weak transcription Hela-S3 cervix
31 chr5:40714400-40720800 Weak transcription Primary monocytes fromperipheralblood blood
32 chr5:40714400-40721200 Weak transcription Colon Smooth Muscle Colon
33 chr5:40714400-40721400 Weak transcription Brain Hippocampus Middle brain
34 chr5:40714400-40727400 Weak transcription Brain Anterior Caudate brain
35 chr5:40714600-40720800 Weak transcription Small Intestine intestine
36 chr5:40714600-40720800 Weak transcription HSMMtube muscle
37 chr5:40714600-40739400 Weak transcription GM12878-XiMat blood
38 chr5:40715000-40721000 Weak transcription Cortex derived primary cultured neurospheres brain
39 chr5:40715400-40733600 Weak transcription Fetal Heart heart
40 chr5:40715400-40739400 Weak transcription Placenta Amnion Placenta Amnion
41 chr5:40715600-40734800 Weak transcription NHEK skin
42 chr5:40716400-40733200 Weak transcription HUVEC blood vessel
43 chr5:40716400-40733600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
44 chr5:40716400-40733800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
45 chr5:40716600-40720800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
46 chr5:40716800-40720800 Weak transcription Primary neutrophils fromperipheralblood blood
47 chr5:40716800-40721200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
48 chr5:40716800-40724000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
49 chr5:40717000-40720800 Weak transcription Placenta Placenta
50 chr5:40717000-40727400 Weak transcription Skeletal Muscle Female skeletal muscle

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Last update: Aug 31, 2015