The 2.0 version of rSNPBase

Variant report

Variant rs249444
Chromosome Location chr5:40830426-40830427
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:40823600-40833200 Strong transcription Thymus Thymus
2 chr5:40824200-40833000 Weak transcription Fetal Heart heart
3 chr5:40824200-40833000 Weak transcription Psoas Muscle Psoas
4 chr5:40824800-40833000 Strong transcription Monocytes-CD14+_RO01746 blood
5 chr5:40824800-40833200 Strong transcription Fetal Thymus thymus
6 chr5:40824800-40833600 Strong transcription Brain Germinal Matrix brain
7 chr5:40825000-40832600 Strong transcription Sigmoid Colon Sigmoid Colon
8 chr5:40825000-40832800 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
9 chr5:40825200-40831400 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
10 chr5:40825200-40832200 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
11 chr5:40825200-40832200 Strong transcription Liver Liver
12 chr5:40825200-40832600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
13 chr5:40825200-40833200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr5:40825200-40833400 Strong transcription Brain Anterior Caudate brain
15 chr5:40825400-40830800 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
16 chr5:40825400-40831400 Strong transcription Primary T helper cells PMA-I stimulated --
17 chr5:40825400-40831800 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
18 chr5:40825400-40832000 Strong transcription HUES64 Cell Line embryonic stem cell
19 chr5:40825400-40833800 Strong transcription Fetal Muscle Trunk muscle
20 chr5:40825600-40831200 Strong transcription NHLF lung
21 chr5:40825600-40831600 Strong transcription HMEC breast
22 chr5:40825600-40831800 Strong transcription HUES6 Cell Line embryonic stem cell
23 chr5:40825600-40831800 Strong transcription Muscle Satellite Cultured Cells --
24 chr5:40825600-40831800 Strong transcription NH-A brain
25 chr5:40825600-40832000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
26 chr5:40825600-40832000 Strong transcription Osteobl bone
27 chr5:40825600-40832200 Strong transcription HSMM muscle
28 chr5:40825600-40832600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
29 chr5:40825600-40832600 Strong transcription Fetal Stomach stomach
30 chr5:40825600-40832600 Strong transcription Spleen Spleen
31 chr5:40825600-40832800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
32 chr5:40825600-40833000 Strong transcription Brain Inferior Temporal Lobe brain
33 chr5:40825600-40833200 Strong transcription Primary mononuclear cells fromperipheralblood Blood
34 chr5:40825600-40833200 Strong transcription Fetal Muscle Leg muscle
35 chr5:40825600-40833200 Strong transcription Left Ventricle heart
36 chr5:40825600-40833400 Strong transcription Brain Dorsolateral Prefrontal Cortex brain
37 chr5:40825600-40833400 Strong transcription Rectal Mucosa Donor 29 rectum
38 chr5:40825800-40831800 Strong transcription Fetal Intestine Small intestine
39 chr5:40825800-40833200 Strong transcription Primary T cells fromperipheralblood blood
40 chr5:40826000-40831200 Strong transcription GM12878-XiMat blood
41 chr5:40826000-40832200 Strong transcription H1 Cell Line embryonic stem cell
42 chr5:40826000-40833200 Strong transcription Cortex derived primary cultured neurospheres brain
43 chr5:40826000-40833200 Strong transcription Fetal Brain Female brain
44 chr5:40826000-40833400 Strong transcription Primary monocytes fromperipheralblood blood
45 chr5:40826000-40833400 Strong transcription Placenta Amnion Placenta Amnion
46 chr5:40826200-40832000 Strong transcription Primary T helper cells fromperipheralblood blood
47 chr5:40826200-40832200 Strong transcription iPS-20b Cell Line embryonic stem cell
48 chr5:40826200-40833000 Strong transcription Adipose Nuclei Adipose
49 chr5:40826400-40831600 Strong transcription Primary hematopoietic stem cells short term culture blood
50 chr5:40826400-40831600 Strong transcription Primary T helper 17 cells PMA-I stimulated --

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Last update: Aug 31, 2015