The 2.0 version of rSNPBase

Variant report

Variant rs438604
Chromosome Location chr5:40820057-40820058
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:26 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:40808400-40826600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
2 chr5:40808800-40825600 Weak transcription HSMM muscle
3 chr5:40813200-40823600 Weak transcription K562 blood
4 chr5:40814000-40821600 Weak transcription Thymus Thymus
5 chr5:40814200-40826000 Weak transcription H1 Cell Line embryonic stem cell
6 chr5:40814200-40826000 Weak transcription GM12878-XiMat blood
7 chr5:40814200-40826400 Weak transcription Primary hematopoietic stem cells short term culture blood
8 chr5:40814400-40825000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
9 chr5:40814400-40825200 Weak transcription iPS-18 Cell Line embryonic stem cell
10 chr5:40814600-40827000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
11 chr5:40816600-40826600 Weak transcription Brain Cingulate Gyrus brain
12 chr5:40816600-40826800 Weak transcription Brain Angular Gyrus brain
13 chr5:40817400-40821600 Weak transcription Fetal Thymus thymus
14 chr5:40818600-40826600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
15 chr5:40818600-40827000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
16 chr5:40818800-40825200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
17 chr5:40818800-40826200 Weak transcription iPS-20b Cell Line embryonic stem cell
18 chr5:40819000-40825200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
19 chr5:40819000-40825600 Weak transcription NH-A brain
20 chr5:40819000-40825600 Weak transcription NHLF lung
21 chr5:40819400-40826600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
22 chr5:40819600-40821200 Weak transcription Fetal Brain Female brain
23 chr5:40819600-40826600 Weak transcription Primary B cells from cord blood blood
24 chr5:40820000-40826400 Weak transcription Primary B cells from peripheral blood blood
25 chr5:40820000-40826600 Weak transcription Rectal Smooth Muscle rectum
26 chr5:40820000-40826800 Weak transcription Brain Hippocampus Middle brain

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Last update: Aug 31, 2015