The 2.0 version of rSNPBase

Variant report

Variant rs837100
Chromosome Location chr5:40777250-40777251
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:40756000-40780600 Weak transcription Spleen Spleen
2 chr5:40756200-40797200 Weak transcription Gastric stomach
3 chr5:40756400-40780600 Weak transcription Esophagus oesophagus
4 chr5:40756400-40785200 Weak transcription ES-WA7 Cell Line embryonic stem cell
5 chr5:40756400-40797400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
6 chr5:40756600-40780600 Weak transcription Pancreas Pancrea
7 chr5:40756600-40781200 Weak transcription Fetal Brain Male brain
8 chr5:40758400-40777800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
9 chr5:40760000-40777600 Strong transcription HUES64 Cell Line embryonic stem cell
10 chr5:40760600-40777600 Strong transcription Primary T regulatory cells fromperipheralblood blood
11 chr5:40760800-40777600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
12 chr5:40761400-40777600 Strong transcription Primary T helper cells PMA-I stimulated --
13 chr5:40761600-40777600 Strong transcription iPS-20b Cell Line embryonic stem cell
14 chr5:40762000-40777800 Strong transcription Primary B cells from peripheral blood blood
15 chr5:40762000-40778400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
16 chr5:40763600-40777600 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
17 chr5:40765400-40778200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
18 chr5:40765400-40796600 Weak transcription Right Ventricle heart
19 chr5:40765600-40796600 Weak transcription Placenta Amnion Placenta Amnion
20 chr5:40766000-40782200 Weak transcription Brain Substantia Nigra brain
21 chr5:40769200-40777600 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr5:40769600-40777800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
23 chr5:40769800-40779000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
24 chr5:40770000-40777800 Strong transcription Fetal Muscle Leg muscle
25 chr5:40771200-40777600 Strong transcription HUES48 Cell Line embryonic stem cell
26 chr5:40771400-40777600 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
27 chr5:40771400-40778000 Strong transcription Primary T cells fromperipheralblood blood
28 chr5:40771600-40788600 Weak transcription Fetal Stomach stomach
29 chr5:40771800-40781400 Weak transcription HSMMtube muscle
30 chr5:40773000-40788200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
31 chr5:40773200-40777400 Strong transcription Ovary ovary
32 chr5:40773600-40777600 Strong transcription Primary T helper naive cells from peripheral blood blood
33 chr5:40773600-40777800 Strong transcription NH-A brain
34 chr5:40773800-40777600 Strong transcription iPS-18 Cell Line embryonic stem cell
35 chr5:40774400-40777800 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
36 chr5:40774400-40780800 Weak transcription Skeletal Muscle Male skeletal muscle
37 chr5:40774600-40777600 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
38 chr5:40774800-40782200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
39 chr5:40775400-40777400 Strong transcription Fetal Brain Female brain
40 chr5:40776200-40777600 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
41 chr5:40776200-40782000 Weak transcription Pancreatic Islets Pancreatic Islet
42 chr5:40776200-40797000 Weak transcription Colonic Mucosa Colon
43 chr5:40776400-40781800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
44 chr5:40776400-40782000 Weak transcription Colon Smooth Muscle Colon
45 chr5:40776400-40784800 Weak transcription ES-I3 Cell Line embryonic stem cell
46 chr5:40776600-40777800 Strong transcription Primary monocytes fromperipheralblood blood
47 chr5:40776600-40777800 Strong transcription Osteobl bone
48 chr5:40776600-40779600 Weak transcription Primary T killer naive cells fromperipheralblood blood
49 chr5:40776600-40782000 Weak transcription Small Intestine intestine
50 chr5:40776600-40786200 Weak transcription GM12878-XiMat blood

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Last update: Aug 31, 2015