The 2.0 version of rSNPBase

Variant report

Variant rs154269
Chromosome Location chr5:40797662-40797663
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:40795800-40798600 Active TSS GM12878-XiMat blood
2 chr5:40795800-40800000 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
3 chr5:40796200-40799600 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
4 chr5:40796200-40799600 Active TSS Fetal Intestine Large intestine
5 chr5:40796400-40797800 Flanking Active TSS Adipose Nuclei Adipose
6 chr5:40796400-40799200 Active TSS iPS-20b Cell Line embryonic stem cell
7 chr5:40796400-40800000 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
8 chr5:40796400-40800000 Active TSS NHLF lung
9 chr5:40796600-40797800 Flanking Active TSS Primary neutrophils fromperipheralblood blood
10 chr5:40796600-40798000 Active TSS Right Atrium heart
11 chr5:40796600-40798800 Active TSS Stomach Smooth Muscle stomach
12 chr5:40796600-40799000 Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr5:40796600-40799000 Active TSS Stomach Mucosa stomach
14 chr5:40796600-40799000 Active TSS NH-A brain
15 chr5:40796600-40799200 Active TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
16 chr5:40796600-40799200 Active TSS Fetal Brain Male brain
17 chr5:40796600-40799200 Active TSS Fetal Intestine Small intestine
18 chr5:40796600-40799200 Active TSS HSMMtube muscle
19 chr5:40796600-40799400 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
20 chr5:40796600-40799600 Active TSS IMR90 fetal lung fibroblasts Cell Line lung
21 chr5:40796600-40799600 Active TSS Ovary ovary
22 chr5:40796600-40799800 Active TSS HUES48 Cell Line embryonic stem cell
23 chr5:40796600-40799800 Active TSS Fetal Kidney kidney
24 chr5:40796600-40800000 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
25 chr5:40796600-40800400 Active TSS HUES6 Cell Line embryonic stem cell
26 chr5:40796800-40798800 Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
27 chr5:40796800-40799000 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
28 chr5:40796800-40799000 Active TSS Rectal Smooth Muscle rectum
29 chr5:40796800-40799200 Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
30 chr5:40796800-40799200 Active TSS Aorta Aorta
31 chr5:40796800-40799200 Active TSS Fetal Muscle Leg muscle
32 chr5:40796800-40799200 Active TSS Psoas Muscle Psoas
33 chr5:40796800-40799200 Active TSS Right Ventricle heart
34 chr5:40796800-40799400 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
35 chr5:40796800-40799400 Active TSS iPS-15b Cell Line embryonic stem cell
36 chr5:40796800-40799400 Active TSS Fetal Stomach stomach
37 chr5:40796800-40799600 Active TSS NHDF-Ad bronchial
38 chr5:40797000-40797800 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
39 chr5:40797000-40798800 Active TSS Placenta Placenta
40 chr5:40797000-40799000 Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
41 chr5:40797000-40799000 Active TSS Fetal Brain Female brain
42 chr5:40797000-40799000 Active TSS HSMM muscle
43 chr5:40797000-40799200 Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
44 chr5:40797000-40799200 Active TSS Colonic Mucosa Colon
45 chr5:40797000-40799200 Active TSS Fetal Muscle Trunk muscle
46 chr5:40797000-40799200 Active TSS Thymus Thymus
47 chr5:40797000-40799400 Active TSS K562 blood
48 chr5:40797000-40799800 Active TSS ES-I3 Cell Line embryonic stem cell
49 chr5:40797000-40800000 Active TSS H1 Cell Line embryonic stem cell
50 chr5:40797200-40797800 Flanking Active TSS Primary mononuclear cells fromperipheralblood Blood

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Last update: Aug 31, 2015