Variant report
| Variant | rs154277 |
|---|---|
| Chromosome Location | chr5:40781639-40781640 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:40756200-40797200 | Weak transcription | Gastric | stomach |
| 2 | chr5:40756400-40785200 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
| 3 | chr5:40756400-40797400 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 4 | chr5:40765400-40796600 | Weak transcription | Right Ventricle | heart |
| 5 | chr5:40765600-40796600 | Weak transcription | Placenta Amnion | Placenta Amnion |
| 6 | chr5:40766000-40782200 | Weak transcription | Brain Substantia Nigra | brain |
| 7 | chr5:40771600-40788600 | Weak transcription | Fetal Stomach | stomach |
| 8 | chr5:40773000-40788200 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 9 | chr5:40774800-40782200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 10 | chr5:40776200-40782000 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
| 11 | chr5:40776200-40797000 | Weak transcription | Colonic Mucosa | Colon |
| 12 | chr5:40776400-40781800 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
| 13 | chr5:40776400-40782000 | Weak transcription | Colon Smooth Muscle | Colon |
| 14 | chr5:40776400-40784800 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
| 15 | chr5:40776600-40782000 | Weak transcription | Small Intestine | intestine |
| 16 | chr5:40776600-40786200 | Weak transcription | GM12878-XiMat | blood |
| 17 | chr5:40776600-40787600 | Weak transcription | Hela-S3 | cervix |
| 18 | chr5:40776800-40782000 | Weak transcription | Brain Germinal Matrix | brain |
| 19 | chr5:40776800-40782800 | Weak transcription | H9 Cell Line | embryonic stem cell |
| 20 | chr5:40776800-40784600 | Weak transcription | HUVEC | blood vessel |
| 21 | chr5:40777000-40781800 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
| 22 | chr5:40777000-40781800 | Weak transcription | NHLF | lung |
| 23 | chr5:40777000-40782000 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
| 24 | chr5:40777000-40782000 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
| 25 | chr5:40777000-40782000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 26 | chr5:40777000-40782000 | Weak transcription | Brain Hippocampus Middle | brain |
| 27 | chr5:40777000-40782000 | Weak transcription | Duodenum Mucosa | Duodenum |
| 28 | chr5:40777000-40782000 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
| 29 | chr5:40777000-40782000 | Weak transcription | Fetal Lung | lung |
| 30 | chr5:40777000-40782000 | Weak transcription | Sigmoid Colon | Sigmoid Colon |
| 31 | chr5:40777000-40782200 | Weak transcription | Brain Cingulate Gyrus | brain |
| 32 | chr5:40777000-40784000 | Weak transcription | Rectal Mucosa Donor 29 | rectum |
| 33 | chr5:40777000-40784200 | Weak transcription | Primary T killer memory cells from peripheral blood | blood |
| 34 | chr5:40777000-40784400 | Weak transcription | Primary T helper memory cells from peripheral blood 1 | blood |
| 35 | chr5:40777000-40784400 | Weak transcription | Brain Inferior Temporal Lobe | brain |
| 36 | chr5:40777000-40784400 | Weak transcription | Fetal Kidney | kidney |
| 37 | chr5:40777000-40787800 | Weak transcription | HMEC | breast |
| 38 | chr5:40777000-40788000 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
| 39 | chr5:40777000-40788200 | Weak transcription | Brain Anterior Caudate | brain |
| 40 | chr5:40777000-40789400 | Weak transcription | Fetal Heart | heart |
| 41 | chr5:40777000-40796600 | Weak transcription | Stomach Smooth Muscle | stomach |
| 42 | chr5:40777000-40796600 | Weak transcription | Thymus | Thymus |
| 43 | chr5:40777000-40796800 | Weak transcription | Primary T cells effector/memory enriched fromperipheralblood | blood |
| 44 | chr5:40777000-40797000 | Weak transcription | H1 Cell Line | embryonic stem cell |
| 45 | chr5:40777200-40781800 | Weak transcription | Primary T helper cells fromperipheralblood | blood |
| 46 | chr5:40777200-40781800 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
| 47 | chr5:40777200-40781800 | Weak transcription | Muscle Satellite Cultured Cells | -- |
| 48 | chr5:40777200-40781800 | Weak transcription | Skeletal Muscle Female | skeletal muscle |
| 49 | chr5:40777200-40782200 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 50 | chr5:40777200-40782800 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
