The 2.0 version of rSNPBase

Variant report

Variant rs445367
Chromosome Location chr5:40825604-40825605
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:117 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:40808400-40826600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
2 chr5:40814200-40826000 Weak transcription H1 Cell Line embryonic stem cell
3 chr5:40814200-40826000 Weak transcription GM12878-XiMat blood
4 chr5:40814200-40826400 Weak transcription Primary hematopoietic stem cells short term culture blood
5 chr5:40814600-40827000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
6 chr5:40816600-40826600 Weak transcription Brain Cingulate Gyrus brain
7 chr5:40816600-40826800 Weak transcription Brain Angular Gyrus brain
8 chr5:40818600-40826600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
9 chr5:40818600-40827000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
10 chr5:40818800-40826200 Weak transcription iPS-20b Cell Line embryonic stem cell
11 chr5:40819400-40826600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
12 chr5:40819600-40826600 Weak transcription Primary B cells from cord blood blood
13 chr5:40820000-40826400 Weak transcription Primary B cells from peripheral blood blood
14 chr5:40820000-40826600 Weak transcription Rectal Smooth Muscle rectum
15 chr5:40820000-40826800 Weak transcription Brain Hippocampus Middle brain
16 chr5:40820400-40827400 Weak transcription Brain Substantia Nigra brain
17 chr5:40821000-40827400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
18 chr5:40821400-40828800 Weak transcription Gastric stomach
19 chr5:40821600-40827200 Weak transcription ES-I3 Cell Line embryonic stem cell
20 chr5:40822000-40826800 Weak transcription Esophagus oesophagus
21 chr5:40822400-40826600 Weak transcription Breast Myoepithelial Primary Cells Breast
22 chr5:40822400-40826800 Weak transcription Rectal Mucosa Donor 31 rectum
23 chr5:40822600-40826000 Weak transcription Fetal Brain Female brain
24 chr5:40823000-40826400 Weak transcription Small Intestine intestine
25 chr5:40823600-40826400 Weak transcription NHDF-Ad bronchial
26 chr5:40823600-40826600 Weak transcription H9 Cell Line embryonic stem cell
27 chr5:40823600-40826600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
28 chr5:40823600-40833200 Strong transcription Thymus Thymus
29 chr5:40823800-40826400 Weak transcription Pancreas Pancrea
30 chr5:40823800-40826600 Weak transcription Fetal Adrenal Gland Adrenal Gland
31 chr5:40823800-40826600 Weak transcription HSMMtube muscle
32 chr5:40824000-40826000 Weak transcription Cortex derived primary cultured neurospheres brain
33 chr5:40824000-40826000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr5:40824000-40826200 Weak transcription Adipose Nuclei Adipose
35 chr5:40824000-40826400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
36 chr5:40824000-40826400 Weak transcription NHEK skin
37 chr5:40824000-40826600 Weak transcription Primary T cells from cord blood blood
38 chr5:40824000-40826600 Weak transcription Primary T regulatory cells fromperipheralblood blood
39 chr5:40824000-40826600 Weak transcription Placenta Placenta
40 chr5:40824000-40826800 Weak transcription Fetal Kidney kidney
41 chr5:40824200-40825800 Weak transcription Primary T cells fromperipheralblood blood
42 chr5:40824200-40825800 Weak transcription Fetal Intestine Small intestine
43 chr5:40824200-40826000 Weak transcription HUVEC blood vessel
44 chr5:40824200-40826400 Weak transcription Duodenum Smooth Muscle Duodenum
45 chr5:40824200-40826400 Weak transcription Stomach Smooth Muscle stomach
46 chr5:40824200-40826600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
47 chr5:40824200-40826600 Weak transcription Primary neutrophils fromperipheralblood blood
48 chr5:40824200-40826600 Weak transcription Duodenum Mucosa Duodenum
49 chr5:40824200-40826600 Weak transcription Fetal Intestine Large intestine
50 chr5:40824200-40827200 Weak transcription Primary hematopoietic stem cells blood

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Last update: Aug 31, 2015