The 2.0 version of rSNPBase

Variant report

Variant rs463040
Chromosome Location chr5:40824312-40824313
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:96 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:40808400-40826600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
2 chr5:40808800-40825600 Weak transcription HSMM muscle
3 chr5:40814200-40826000 Weak transcription H1 Cell Line embryonic stem cell
4 chr5:40814200-40826000 Weak transcription GM12878-XiMat blood
5 chr5:40814200-40826400 Weak transcription Primary hematopoietic stem cells short term culture blood
6 chr5:40814400-40825000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
7 chr5:40814400-40825200 Weak transcription iPS-18 Cell Line embryonic stem cell
8 chr5:40814600-40827000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
9 chr5:40816600-40826600 Weak transcription Brain Cingulate Gyrus brain
10 chr5:40816600-40826800 Weak transcription Brain Angular Gyrus brain
11 chr5:40818600-40826600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
12 chr5:40818600-40827000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
13 chr5:40818800-40825200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
14 chr5:40818800-40826200 Weak transcription iPS-20b Cell Line embryonic stem cell
15 chr5:40819000-40825200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
16 chr5:40819000-40825600 Weak transcription NH-A brain
17 chr5:40819000-40825600 Weak transcription NHLF lung
18 chr5:40819400-40826600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
19 chr5:40819600-40826600 Weak transcription Primary B cells from cord blood blood
20 chr5:40820000-40826400 Weak transcription Primary B cells from peripheral blood blood
21 chr5:40820000-40826600 Weak transcription Rectal Smooth Muscle rectum
22 chr5:40820000-40826800 Weak transcription Brain Hippocampus Middle brain
23 chr5:40820200-40825600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
24 chr5:40820400-40825600 Weak transcription Fetal Muscle Leg muscle
25 chr5:40820400-40827400 Weak transcription Brain Substantia Nigra brain
26 chr5:40820600-40824800 Weak transcription Brain Germinal Matrix brain
27 chr5:40820800-40825200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
28 chr5:40820800-40825400 Weak transcription HUES64 Cell Line embryonic stem cell
29 chr5:40821000-40827400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
30 chr5:40821200-40825600 Weak transcription Brain Inferior Temporal Lobe brain
31 chr5:40821400-40824400 Weak transcription A549 lung
32 chr5:40821400-40825400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
33 chr5:40821400-40828800 Weak transcription Gastric stomach
34 chr5:40821600-40825600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
35 chr5:40821600-40825600 Weak transcription Fetal Stomach stomach
36 chr5:40821600-40827200 Weak transcription ES-I3 Cell Line embryonic stem cell
37 chr5:40821800-40825200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr5:40822000-40824800 Weak transcription Fetal Thymus thymus
39 chr5:40822000-40826800 Weak transcription Esophagus oesophagus
40 chr5:40822200-40825400 Weak transcription Fetal Muscle Trunk muscle
41 chr5:40822200-40825600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
42 chr5:40822200-40825600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
43 chr5:40822200-40825600 Weak transcription Spleen Spleen
44 chr5:40822400-40826600 Weak transcription Breast Myoepithelial Primary Cells Breast
45 chr5:40822400-40826800 Weak transcription Rectal Mucosa Donor 31 rectum
46 chr5:40822600-40825200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
47 chr5:40822600-40826000 Weak transcription Fetal Brain Female brain
48 chr5:40823000-40826400 Weak transcription Small Intestine intestine
49 chr5:40823200-40824800 Weak transcription Monocytes-CD14+_RO01746 blood
50 chr5:40823400-40825000 Weak transcription Sigmoid Colon Sigmoid Colon

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Last update: Aug 31, 2015