Variant report

Variant	rs859634
Chromosome Location	chr1:172712225-172712226
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172710406..172712231-chr1:172726192..172728085,2	MCF-7	breast:
2	chr1:172711436..172712390-chr1:173171138..173171946,4	MCF-7	breast:
3	chr1:172711457..172712657-chr1:173377723..173378540,3	MCF-7	breast:
4	chr1:172711900..172714556-chr1:173831584..173833588,3	MCF-7	breast:
5	chr1:172410499..172413475-chr1:172711995..172715469,3	K562	blood:
6	chr1:172712052..172713758-chr1:173835242..173837024,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135845	Chromatin interaction
ENSG00000234741	Chromatin interaction
ENSG00000270084	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10912460	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1102704	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1102706	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1102707	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12136569	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs704845	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859618	0.95[EUR][1000 genomes]
rs859619	0.85[EUR][1000 genomes]
rs859621	0.95[EUR][1000 genomes]
rs859623	0.84[EUR][1000 genomes]
rs859631	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs859633	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs859636	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859637	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859638	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859639	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859641	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859643	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859644	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859647	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859648	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859673	0.84[EUR][1000 genomes]
rs863578	1.00[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172711400-172714000	Weak transcription	Primary T cells from cord blood	blood
2	chr1:172712000-172712400	Enhancers	NH-A	brain
3	chr1:172712000-172712400	Enhancers	Osteobl	bone
4	chr1:172712000-172712600	Enhancers	Hela-S3	cervix
5	chr1:172712000-172712800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr1:172712000-172712800	Enhancers	NHLF	lung
7	chr1:172712000-172714000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr1:172712000-172714000	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr1:172712000-172716400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr1:172712000-172716400	Enhancers	HMEC	breast
11	chr1:172712000-172717000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:172712200-172712400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr1:172712200-172712400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr1:172712200-172712400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr1:172712200-172712400	Enhancers	HSMM	muscle
16	chr1:172712200-172712600	Enhancers	HUVEC	blood vessel
17	chr1:172712200-172712800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr1:172712200-172712800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr1:172712200-172716400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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