Variant report

Variant	rs894075
Chromosome Location	chr8:49796855-49796856
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10097910	0.83[CEU][hapmap]
rs1023769	1.00[CEU][hapmap];0.83[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1441003	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1561656	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2735455	1.00[CEU][hapmap]
rs55868933	0.85[EUR][1000 genomes]
rs56409214	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7006184	1.00[AFR][1000 genomes]
rs894076	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890854	chr8:49738821-49838908	Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49791600-49800600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr8:49793400-49802800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:49796200-49799200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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