Variant report

Variant	rs894076
Chromosome Location	chr8:49816187-49816188
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1023769	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1441003	0.85[EUR][1000 genomes]
rs1561656	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2735455	1.00[CEU][hapmap]
rs4873290	0.93[JPT][hapmap]
rs55868933	0.88[EUR][1000 genomes]
rs56409214	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7007780	0.94[JPT][hapmap]
rs894075	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890854	chr8:49738821-49838908	Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49808800-49818600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:49809400-49817800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:49811600-49822000	Weak transcription	Fetal Kidney	kidney
4	chr8:49813400-49818200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr8:49814400-49817800	Enhancers	HSMM	muscle
6	chr8:49814600-49816400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr8:49814800-49816200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr8:49814800-49816200	Enhancers	HSMMtube	muscle
9	chr8:49814800-49816400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr8:49814800-49816800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr8:49814800-49817400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr8:49814800-49817600	Enhancers	Placenta Amnion	Placenta Amnion
13	chr8:49814800-49817800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr8:49814800-49817800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:49814800-49818000	Enhancers	NHLF	lung
16	chr8:49814800-49818200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr8:49814800-49818200	Enhancers	NHDF-Ad	bronchial
18	chr8:49815000-49818000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr8:49815000-49821000	Weak transcription	Fetal Muscle Trunk	muscle
20	chr8:49815000-49821200	Weak transcription	Fetal Lung	lung
21	chr8:49815400-49816400	Flanking Active TSS	NH-A	brain
22	chr8:49815400-49816600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr8:49815600-49816400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr8:49815600-49816400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr8:49815600-49816400	Weak transcription	Ovary	ovary
26	chr8:49815600-49817000	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr8:49815600-49817400	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr8:49815800-49816200	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr8:49815800-49816200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr8:49815800-49816800	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr8:49815800-49816800	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr8:49815800-49816800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr8:49815800-49817200	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr8:49816000-49816400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr8:49816000-49816400	Enhancers	Osteobl	bone
36	chr8:49816000-49816800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
37	chr8:49816000-49817800	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr8:49816000-49818000	Enhancers	Muscle Satellite Cultured Cells	--
39	chr8:49816000-49821000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr8:49816000-49823000	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links