Variant report

Variant	rs9285066
Chromosome Location	chr13:30153156-30153157
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:30147733..30149517-chr13:30152740..30154897,2	MCF-7	breast:
2	chr13:30147177..30149389-chr13:30151174..30153674,3	K562	blood:
3	chr13:30146852..30149367-chr13:30152203..30154425,2	MCF-7	breast:
4	chr13:30142186..30144552-chr13:30152474..30154361,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10220050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13378570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2669038	0.94[EUR][1000 genomes]
rs3011607	0.97[EUR][1000 genomes]
rs34967062	0.97[EUR][1000 genomes]
rs478085	0.97[EUR][1000 genomes]
rs555913	0.97[EUR][1000 genomes]
rs73454227	0.93[EUR][1000 genomes]
rs7998704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9314960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9314961	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9314962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9578108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9579402	0.80[AFR][1000 genomes]
rs9579405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9579406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9579407	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9579408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9579410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9579411	1.00[AFR][1000 genomes]
rs9579413	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv979	chr13:30122254-30167821	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30126000-30161400	Weak transcription	Primary B cells from cord blood	blood
2	chr13:30127600-30156400	Weak transcription	Lung	lung
3	chr13:30128000-30163600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr13:30128600-30161800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr13:30128800-30155800	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr13:30128800-30168200	Weak transcription	Primary T cells from cord blood	blood
7	chr13:30138600-30154000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr13:30138800-30155800	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr13:30138800-30159800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr13:30144400-30155600	Weak transcription	HMEC	breast
11	chr13:30144600-30154000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr13:30144800-30154000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr13:30146000-30154000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr13:30146400-30154000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr13:30146400-30155400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr13:30146800-30154000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr13:30147000-30154200	Weak transcription	Hela-S3	cervix
18	chr13:30147200-30163200	Weak transcription	Fetal Intestine Small	intestine
19	chr13:30147600-30155400	Weak transcription	Fetal Brain Male	brain
20	chr13:30147800-30155200	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr13:30147800-30155600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr13:30147800-30163600	Weak transcription	Thymus	Thymus
23	chr13:30148200-30155600	Weak transcription	Ovary	ovary
24	chr13:30148200-30156400	Weak transcription	Stomach Mucosa	stomach
25	chr13:30148200-30156600	Weak transcription	A549	lung
26	chr13:30148200-30156800	Weak transcription	NHLF	lung
27	chr13:30148400-30155800	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr13:30148400-30160400	Weak transcription	Primary hematopoietic stem cells	blood
29	chr13:30148400-30167400	Weak transcription	Primary B cells from peripheral blood	blood
30	chr13:30148600-30154000	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr13:30148600-30154600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr13:30148600-30155600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr13:30148600-30156000	Weak transcription	Small Intestine	intestine
34	chr13:30148600-30160800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr13:30148800-30154000	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr13:30148800-30157400	Weak transcription	GM12878-XiMat	blood
37	chr13:30149200-30155600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr13:30149800-30154600	Enhancers	Pancreas	Pancrea
39	chr13:30150000-30154800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr13:30150600-30153200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr13:30150600-30154200	Enhancers	Fetal Muscle Leg	muscle
42	chr13:30150800-30153800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr13:30150800-30154000	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr13:30150800-30154600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr13:30150800-30154600	Enhancers	Left Ventricle	heart
46	chr13:30150800-30155800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr13:30151000-30153200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr13:30151000-30154800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr13:30151200-30153200	Enhancers	Muscle Satellite Cultured Cells	--
50	chr13:30151200-30153200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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