Variant report

Variant	rs9288992
Chromosome Location	chr3:113859137-113859138
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10049226	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10934253	1.00[EUR][1000 genomes]
rs11921500	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11929108	0.85[EUR][1000 genomes]
rs12330143	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1466578	1.00[EUR][1000 genomes]
rs1800827	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2654754	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs28419745	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36211802	1.00[ASN][1000 genomes]
rs57309847	1.00[EUR][1000 genomes]
rs61595610	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6777674	1.00[ASN][1000 genomes]
rs6780162	1.00[ASN][1000 genomes]
rs6785102	1.00[ASN][1000 genomes]
rs6786450	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6793390	1.00[ASN][1000 genomes]
rs6804359	1.00[ASN][1000 genomes]
rs6806217	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6808291	1.00[EUR][1000 genomes]
rs72942687	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72944698	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73235918	1.00[ASN][1000 genomes]
rs73235919	1.00[ASN][1000 genomes]
rs73235921	1.00[ASN][1000 genomes]
rs73235923	1.00[ASN][1000 genomes]
rs7619130	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7629948	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs9288991	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9288993	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9681085	1.00[EUR][1000 genomes]
rs9682405	1.00[EUR][1000 genomes]
rs9811326	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9824856	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9828046	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9837524	1.00[EUR][1000 genomes]
rs9859762	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9871472	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9873053	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9874427	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9878569	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877352	chr3:113744010-113870078	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv877353	chr3:113789029-113879562	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv948596	chr3:113852666-114434158	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	esv3447208	chr3:113853785-113995233	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113858400-113859400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:113859000-113862200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links