Variant report

Variant	rs1800827
Chromosome Location	chr3:113891185-113891186
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10049226	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10934253	0.95[EUR][1000 genomes]
rs11921500	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11929108	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12330143	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1466578	0.95[EUR][1000 genomes]
rs2654754	1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs28419745	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs324041	1.00[CHD][hapmap]
rs36211802	1.00[ASN][1000 genomes]
rs57309847	0.95[EUR][1000 genomes]
rs61595610	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6769975	0.90[ASW][hapmap];1.00[CHD][hapmap]
rs6777674	1.00[ASN][1000 genomes]
rs6780162	1.00[ASN][1000 genomes]
rs6785102	1.00[ASN][1000 genomes]
rs6786450	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6793390	1.00[ASN][1000 genomes]
rs6804359	1.00[ASN][1000 genomes]
rs6806217	1.00[ASW][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6808291	0.95[EUR][1000 genomes]
rs72942687	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72944698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73235918	1.00[ASN][1000 genomes]
rs73235919	1.00[ASN][1000 genomes]
rs73235921	1.00[ASN][1000 genomes]
rs73235923	1.00[ASN][1000 genomes]
rs7619130	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7629948	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9288991	0.85[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs9288992	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9288993	0.85[GIH][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9681085	0.95[EUR][1000 genomes]
rs9682405	0.95[EUR][1000 genomes]
rs9811326	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9824856	1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs9828046	0.85[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs9837524	0.95[EUR][1000 genomes]
rs9859762	0.95[EUR][1000 genomes]
rs9871472	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9873053	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9874427	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9878569	0.85[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948596	chr3:113852666-114434158	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	esv3447208	chr3:113853785-113995233	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113878000-113891400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:113887600-113895400	Weak transcription	Aorta	Aorta
3	chr3:113889400-113895600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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