Variant report
Variant | rs9288991 |
---|---|
Chromosome Location | chr3:113855761-113855762 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
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No data |
rs_ID | r2[population] |
---|---|
rs10049226 | 1.00[EUR][1000 genomes] |
rs10934253 | 1.00[EUR][1000 genomes] |
rs10934262 | 1.00[JPT][hapmap] |
rs11921500 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes] |
rs11929108 | 0.85[EUR][1000 genomes] |
rs12330143 | 1.00[EUR][1000 genomes] |
rs12485249 | 1.00[JPT][hapmap] |
rs1354348 | 1.00[JPT][hapmap] |
rs1466578 | 1.00[EUR][1000 genomes] |
rs1486008 | 1.00[JPT][hapmap] |
rs16822393 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs1800827 | 0.85[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes] |
rs2654754 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2654763 | 1.00[JPT][hapmap] |
rs28419745 | 0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs3732783 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
rs3732791 | 1.00[JPT][hapmap] |
rs4682534 | 1.00[JPT][hapmap] |
rs57309847 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs61595610 | 0.95[EUR][1000 genomes] |
rs6786450 | 0.95[EUR][1000 genomes] |
rs6806217 | 1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes] |
rs6808291 | 1.00[EUR][1000 genomes] |
rs72942687 | 1.00[EUR][1000 genomes] |
rs72944698 | 0.95[EUR][1000 genomes] |
rs7619130 | 0.95[EUR][1000 genomes] |
rs7629948 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes] |
rs9288992 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
rs9288993 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs9681085 | 1.00[EUR][1000 genomes] |
rs9682405 | 1.00[EUR][1000 genomes] |
rs9811326 | 0.95[EUR][1000 genomes] |
rs9824856 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9828046 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
rs9837524 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9859762 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9871472 | 0.95[EUR][1000 genomes] |
rs9873053 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes] |
rs9874427 | 0.95[EUR][1000 genomes] |
rs9878569 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv877352 | chr3:113744010-113870078 | Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
2 | nsv877353 | chr3:113789029-113879562 | Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
3 | nsv948596 | chr3:113852666-114434158 | Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
4 | esv3447208 | chr3:113853785-113995233 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:113854600-113856600 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |