Variant report

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10934262	1.00[JPT][hapmap]
rs10934268	1.00[JPT][hapmap]
rs12485249	1.00[JPT][hapmap]
rs12491518	1.00[JPT][hapmap]
rs12493360	1.00[JPT][hapmap]
rs12496741	1.00[JPT][hapmap]
rs12496777	1.00[JPT][hapmap]
rs1354348	1.00[JPT][hapmap]
rs16822414	0.89[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2654754	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2654763	1.00[JPT][hapmap]
rs34402903	1.00[EUR][1000 genomes]
rs3732783	1.00[JPT][hapmap]
rs3732791	1.00[JPT][hapmap]
rs4682534	1.00[JPT][hapmap]
rs58022642	1.00[EUR][1000 genomes]
rs58332819	1.00[EUR][1000 genomes]
rs58382469	1.00[EUR][1000 genomes]
rs59921297	1.00[EUR][1000 genomes]
rs6786357	1.00[EUR][1000 genomes]
rs6810284	1.00[EUR][1000 genomes]
rs72944605	1.00[EUR][1000 genomes]
rs72944609	1.00[EUR][1000 genomes]
rs72944611	1.00[EUR][1000 genomes]
rs73856223	1.00[EUR][1000 genomes]
rs73856263	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73856264	1.00[EUR][1000 genomes]
rs73856265	1.00[EUR][1000 genomes]
rs73856274	1.00[EUR][1000 genomes]
rs73856276	1.00[EUR][1000 genomes]
rs7612534	1.00[EUR][1000 genomes]
rs9288991	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9824856	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9859762	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948596	chr3:113852666-114434158	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	esv3447208	chr3:113853785-113995233	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113878000-113883200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:113878000-113891400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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