Variant report
Variant | rs1354348 |
---|---|
Chromosome Location | chr3:113906226-113906227 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr3:113775494..113777057-chr3:113905994..113907722,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000151576 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10934262 | 1.00[JPT][hapmap] |
rs10934268 | 1.00[JPT][hapmap] |
rs12485249 | 1.00[JPT][hapmap] |
rs12491518 | 1.00[JPT][hapmap] |
rs12493360 | 1.00[JPT][hapmap] |
rs12496741 | 1.00[JPT][hapmap] |
rs12496777 | 1.00[JPT][hapmap] |
rs1486008 | 1.00[JPT][hapmap] |
rs16822393 | 1.00[JPT][hapmap] |
rs16822478 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
rs2654754 | 1.00[JPT][hapmap] |
rs2654763 | 1.00[JPT][hapmap] |
rs3732783 | 1.00[JPT][hapmap] |
rs3732791 | 1.00[JPT][hapmap] |
rs4682534 | 1.00[JPT][hapmap] |
rs6778623 | 1.00[CEU][hapmap] |
rs9288991 | 1.00[JPT][hapmap] |
rs9824856 | 1.00[JPT][hapmap] |
rs9859762 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv948596 | chr3:113852666-114434158 | Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
2 | esv3447208 | chr3:113853785-113995233 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
3 | nsv1009866 | chr3:113905339-113970399 | ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:113896000-113909400 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |