Variant report

Variant	rs10934262
Chromosome Location	chr3:114043692-114043693
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10934263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10934265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10934266	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10934268	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11706964	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11713117	1.00[AFR][1000 genomes]
rs11915585	1.00[CHB][hapmap]
rs11918680	1.00[CHB][hapmap]
rs12485249	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12487491	1.00[CHB][hapmap]
rs12491518	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12493360	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12496741	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12496777	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12497580	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1354348	1.00[JPT][hapmap]
rs1486008	1.00[JPT][hapmap]
rs16822393	1.00[JPT][hapmap]
rs2654754	1.00[JPT][hapmap]
rs2654763	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733397	1.00[CHB][hapmap]
rs3732783	1.00[JPT][hapmap]
rs3732791	1.00[JPT][hapmap]
rs4682534	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4682539	1.00[CHB][hapmap]
rs9288991	1.00[JPT][hapmap]
rs9824856	1.00[JPT][hapmap]
rs9859762	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948596	chr3:113852666-114434158	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv428094	chr3:113983846-114128496	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:114025600-114057000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:114027000-114051400	Weak transcription	Primary B cells from cord blood	blood
3	chr3:114027400-114057000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr3:114028600-114044000	Weak transcription	Primary B cells from peripheral blood	blood
5	chr3:114030000-114057000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:114031200-114044000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr3:114031800-114047800	Weak transcription	Brain Anterior Caudate	brain
8	chr3:114032600-114049800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr3:114032600-114052200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:114032800-114049800	Weak transcription	Aorta	Aorta
11	chr3:114032800-114049800	Weak transcription	Fetal Muscle Leg	muscle
12	chr3:114032800-114057000	Weak transcription	Fetal Muscle Trunk	muscle
13	chr3:114033000-114050200	Weak transcription	Brain Hippocampus Middle	brain
14	chr3:114033800-114057000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr3:114034200-114050000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr3:114034200-114068800	Weak transcription	Gastric	stomach
17	chr3:114034400-114057800	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr3:114035400-114050200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr3:114035600-114050000	Weak transcription	Brain Substantia Nigra	brain
20	chr3:114035600-114057000	Weak transcription	Fetal Stomach	stomach
21	chr3:114035800-114046600	Weak transcription	GM12878-XiMat	blood
22	chr3:114035800-114049800	Weak transcription	HSMMtube	muscle
23	chr3:114035800-114057000	Weak transcription	NHLF	lung
24	chr3:114035800-114057800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr3:114035800-114069400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr3:114036200-114047800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr3:114036600-114051400	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr3:114037000-114057600	Weak transcription	Primary hematopoietic stem cells	blood
29	chr3:114037600-114047800	Weak transcription	Primary T cells from cord blood	blood
30	chr3:114037600-114057000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr3:114037600-114057000	Weak transcription	Ovary	ovary
32	chr3:114038200-114044200	Strong transcription	Liver	Liver
33	chr3:114038400-114054800	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr3:114038600-114049800	Weak transcription	A549	lung
35	chr3:114038600-114051600	Weak transcription	NHDF-Ad	bronchial
36	chr3:114039000-114044000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr3:114039000-114050200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr3:114039000-114057000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr3:114039000-114067400	Weak transcription	Fetal Kidney	kidney
40	chr3:114039000-114070000	Weak transcription	NH-A	brain
41	chr3:114039000-114082400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr3:114039200-114099000	Weak transcription	Hela-S3	cervix
43	chr3:114040200-114049800	Weak transcription	Duodenum Mucosa	Duodenum
44	chr3:114040400-114049800	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr3:114040400-114057000	Weak transcription	Lung	lung
46	chr3:114040400-114057000	Weak transcription	Pancreas	Pancrea
47	chr3:114040400-114057000	Weak transcription	Right Ventricle	heart
48	chr3:114040600-114044800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr3:114040800-114064800	Strong transcription	HSMM	muscle
50	chr3:114041000-114044400	Weak transcription	Psoas Muscle	Psoas

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