Variant report

Variant	rs324041
Chromosome Location	chr3:113865244-113865245
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12639482	1.00[MEX][hapmap]
rs1385883	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1800827	1.00[CHD][hapmap]
rs2251177	1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2654754	1.00[MEX][hapmap]
rs2654762	1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3732791	1.00[GIH][hapmap]
rs6769975	1.00[CHD][hapmap]
rs9824856	1.00[MEX][hapmap]
rs9825085	1.00[GIH][hapmap]
rs985449	0.88[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877352	chr3:113744010-113870078	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv877353	chr3:113789029-113879562	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv948596	chr3:113852666-114434158	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	esv3447208	chr3:113853785-113995233	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113864200-113868800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr3:113864200-113869400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:113864400-113868800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:113864400-113869000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:113864400-113871000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr3:113865200-113866200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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