Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs7747357	1.00[AFR][1000 genomes]
rs9294893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9294894	1.00[AFR][1000 genomes]
rs9294896	1.00[AFR][1000 genomes]
rs9294897	1.00[AFR][1000 genomes]
rs9294898	1.00[AFR][1000 genomes]
rs9446362	0.90[AFR][1000 genomes]
rs9446363	0.90[AFR][1000 genomes]
rs9446365	1.00[AFR][1000 genomes]
rs9446370	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9446372	0.82[YRI][hapmap]
rs9455402	0.90[AFR][1000 genomes]
rs9455403	1.00[AMR][1000 genomes]
rs9455404	0.90[AFR][1000 genomes]
rs9455405	0.90[AFR][1000 genomes]
rs9455406	0.90[AFR][1000 genomes]
rs9455408	1.00[AFR][1000 genomes]
rs9455411	0.95[AFR][1000 genomes]
rs9455412	0.95[AFR][1000 genomes]
rs9455413	0.95[AFR][1000 genomes]
rs9455415	0.85[AFR][1000 genomes]
rs9455421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455422	1.00[YRI][hapmap]
rs9455423	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9455424	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9455425	0.83[AFR][1000 genomes]
rs9455426	1.00[AFR][1000 genomes]
rs9455427	1.00[AFR][1000 genomes]
rs9455436	0.82[YRI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9294895	CHI3L2	trans	lymphoblastoid	seeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71988200-71997400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:71988200-71997400	Weak transcription	Left Ventricle	heart
3	chr6:71988400-71997800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:71991200-71992000	Enhancers	Esophagus	oesophagus
5	chr6:71991600-71997800	Weak transcription	Lung	lung
6	chr6:71991800-71997200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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