Variant report

Variant	rs9455402
Chromosome Location	chr6:71972425-71972426
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs13212120	1.00[ASN][1000 genomes]
rs13212398	1.00[ASN][1000 genomes]
rs1527718	1.00[ASN][1000 genomes]
rs16881125	1.00[ASN][1000 genomes]
rs16881130	1.00[ASN][1000 genomes]
rs20512	1.00[ASN][1000 genomes]
rs33997649	1.00[ASN][1000 genomes]
rs35154262	1.00[ASN][1000 genomes]
rs41265361	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41265363	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55722044	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61131500	1.00[ASN][1000 genomes]
rs71555480	1.00[ASN][1000 genomes]
rs7739908	1.00[ASN][1000 genomes]
rs7747357	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9294893	0.90[AFR][1000 genomes]
rs9294894	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9294895	0.90[AFR][1000 genomes]
rs9294896	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9294897	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9294898	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9294900	1.00[ASN][1000 genomes]
rs9446362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446363	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446365	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446370	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9455404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455408	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455411	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9455412	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455413	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9455415	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9455416	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9455421	0.90[AFR][1000 genomes]
rs9455422	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455423	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455424	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455425	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455426	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455427	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71955600-71972600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:71968000-71980400	Weak transcription	Aorta	Aorta
3	chr6:71971800-71972600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr6:71972000-71973000	Enhancers	NHDF-Ad	bronchial
5	chr6:71972200-71973200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:71972400-71972800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:71972400-71972800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links