Variant report
| Variant | rs9301781 |
|---|---|
| Chromosome Location | chr13:92828151-92828152 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:92598450..92599301-chr13:92827714..92828302,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10492504 | 1.00[CHB][hapmap] |
| rs1172297 | 1.00[CHB][hapmap] |
| rs1177726 | 1.00[CHB][hapmap] |
| rs1330978 | 1.00[CHB][hapmap] |
| rs1330982 | 1.00[CHB][hapmap] |
| rs1330983 | 1.00[CHB][hapmap] |
| rs1330984 | 1.00[CHB][hapmap] |
| rs1330995 | 1.00[CHB][hapmap] |
| rs1411747 | 1.00[CHB][hapmap] |
| rs16947132 | 1.00[CHB][hapmap] |
| rs16947150 | 1.00[CHB][hapmap] |
| rs17267151 | 1.00[CHB][hapmap] |
| rs17426071 | 1.00[CHB][hapmap] |
| rs2148521 | 1.00[CHB][hapmap] |
| rs2182533 | 1.00[CHB][hapmap] |
| rs2209651 | 1.00[CHB][hapmap] |
| rs4408406 | 1.00[CHB][hapmap] |
| rs4771854 | 1.00[CHB][hapmap] |
| rs6650316 | 1.00[CHB][hapmap] |
| rs7334533 | 1.00[CHB][hapmap] |
| rs7336644 | 1.00[CHB][hapmap] |
| rs7489550 | 1.00[CHB][hapmap] |
| rs7987741 | 1.00[CHB][hapmap] |
| rs7991537 | 1.00[CHB][hapmap] |
| rs880546 | 1.00[CHB][hapmap] |
| rs9301782 | 1.00[CHB][hapmap];1.00[AMR][1000 genomes] |
| rs9523526 | 1.00[CHB][hapmap] |
| rs9523535 | 1.00[CHB][hapmap] |
| rs9556163 | 1.00[CHB][hapmap] |
| rs9560982 | 1.00[CHB][hapmap] |
| rs9560983 | 1.00[CHB][hapmap] |
| rs9560984 | 1.00[CHB][hapmap] |
| rs9560986 | 1.00[CHB][hapmap] |
| rs9560988 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2756005 | chr13:92584199-93080799 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv456066 | chr13:92694581-92884370 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv562723 | chr13:92694581-92884370 | Flanking Active TSS Active TSS Enhancers Weak transcription | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1035365 | chr13:92805325-92926114 | Enhancers Weak transcription Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv1053468 | chr13:92814581-92893231 | Enhancers Active TSS Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:92827600-92828200 | Active TSS | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
