Variant report

Variant	rs7987741
Chromosome Location	chr13:92853752-92853753
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10492504	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1172297	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs1177726	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs1330978	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1330982	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs1330983	0.84[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap]
rs1330984	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs1330995	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs1411747	1.00[CHB][hapmap]
rs1411751	0.94[CEU][hapmap]
rs16947132	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs16947150	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17267151	1.00[CHB][hapmap]
rs17426071	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1819439	0.94[CEU][hapmap]
rs1888545	0.94[CEU][hapmap];0.90[EUR][1000 genomes]
rs2148521	0.94[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs2182533	0.94[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs2209651	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4281579	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4408406	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs4559792	0.90[EUR][1000 genomes]
rs4771854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57786284	0.87[EUR][1000 genomes]
rs59410447	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6650316	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs72636830	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72636831	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72636832	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72636834	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72636840	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7334533	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs7335555	0.94[CEU][hapmap]
rs7336644	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs7489550	0.94[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7991537	1.00[CHB][hapmap]
rs880546	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9301781	1.00[CHB][hapmap]
rs9301782	1.00[CHB][hapmap]
rs9523526	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9523535	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9556163	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs9560982	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs9560983	0.94[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs9560984	0.94[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs9560985	0.87[EUR][1000 genomes]
rs9560986	0.94[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs9560988	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs9589454	0.94[CEU][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv456066	chr13:92694581-92884370	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv562723	chr13:92694581-92884370	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1035365	chr13:92805325-92926114	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1053468	chr13:92814581-92893231	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92849600-92854600	Weak transcription	Fetal Lung	lung

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