Variant report

Variant	rs1888545
Chromosome Location	chr13:92866209-92866210
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10492504	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1172297	0.82[CEU][hapmap]
rs1177726	1.00[CEU][hapmap]
rs1330978	0.94[CEU][hapmap]
rs1330995	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1411751	1.00[CEU][hapmap]
rs16947132	1.00[CEU][hapmap]
rs16947150	1.00[CEU][hapmap]
rs17426071	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1819439	1.00[CEU][hapmap]
rs2148521	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2182533	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2209651	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4281579	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4408406	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4559792	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4771854	0.94[CEU][hapmap];0.90[EUR][1000 genomes]
rs57786284	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59410447	0.91[EUR][1000 genomes]
rs6650316	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs72636830	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72636831	0.80[EUR][1000 genomes]
rs72636832	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72636834	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72636840	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7334533	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7335555	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7336644	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7489550	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7987741	0.94[CEU][hapmap];0.90[EUR][1000 genomes]
rs880546	0.94[CEU][hapmap]
rs9523535	0.94[CEU][hapmap];0.90[EUR][1000 genomes]
rs9556163	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9560982	0.93[CEU][hapmap]
rs9560983	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9560984	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9560985	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9560986	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9560988	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9589454	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv456066	chr13:92694581-92884370	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv562723	chr13:92694581-92884370	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1035365	chr13:92805325-92926114	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1053468	chr13:92814581-92893231	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92863800-92870800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr13:92864000-92870600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr13:92864000-92871200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr13:92865200-92867200	Enhancers	Fetal Lung	lung
5	chr13:92865600-92866800	Weak transcription	Ovary	ovary
6	chr13:92865800-92866800	Weak transcription	Fetal Intestine Large	intestine
7	chr13:92866000-92868200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links