Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10492504	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17426071	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1888545	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2148521	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2182533	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2209651	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4281579	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4559792	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4771854	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57786284	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59410447	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60012009	0.81[AFR][1000 genomes]
rs72636830	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72636831	0.84[EUR][1000 genomes]
rs72636832	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72636834	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7489550	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7987741	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9523535	0.88[EUR][1000 genomes]
rs9560983	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9560984	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9560985	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9560986	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9589454	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv456066	chr13:92694581-92884370	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv562723	chr13:92694581-92884370	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1035365	chr13:92805325-92926114	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1053468	chr13:92814581-92893231	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv456067	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv562726	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92873800-92877400	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr13:92874000-92876600	Weak transcription	Fetal Intestine Large	intestine
3	chr13:92874600-92876600	Weak transcription	Fetal Intestine Small	intestine
4	chr13:92874600-92876800	Weak transcription	Ovary	ovary
5	chr13:92875200-92877200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr13:92875800-92877000	Enhancers	NH-A	brain
7	chr13:92876000-92877600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr13:92876200-92877200	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr13:92876200-92877600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr13:92876400-92876800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr13:92876400-92877600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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