Variant report
Variant | rs9560985 |
---|---|
Chromosome Location | chr13:92879122-92879123 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10492504 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs17426071 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs1888545 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs2148521 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2182533 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2209651 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs4281579 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs4559792 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs4771854 | 0.87[EUR][1000 genomes] |
rs57786284 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs59410447 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs72636830 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs72636831 | 0.83[EUR][1000 genomes] |
rs72636832 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs72636834 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs72636840 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs7489550 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7987741 | 0.87[EUR][1000 genomes] |
rs7995221 | 0.91[AFR][1000 genomes] |
rs9523535 | 0.87[EUR][1000 genomes] |
rs9560983 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9560984 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9560986 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9589454 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv2756005 | chr13:92584199-93080799 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
2 | nsv456066 | chr13:92694581-92884370 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
3 | nsv562723 | chr13:92694581-92884370 | Flanking Active TSS Active TSS Enhancers Weak transcription | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
4 | nsv1035365 | chr13:92805325-92926114 | Enhancers Weak transcription Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
5 | nsv1053468 | chr13:92814581-92893231 | Enhancers Active TSS Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
6 | nsv456067 | chr13:92868073-92967664 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
7 | nsv562726 | chr13:92868073-92967664 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr13:92878800-92879400 | Enhancers | Fetal Intestine Large | intestine |