Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10492504	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17426071	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1888545	0.80[EUR][1000 genomes]
rs2148521	0.83[EUR][1000 genomes]
rs2182533	0.83[EUR][1000 genomes]
rs2209651	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4281579	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4559792	0.80[EUR][1000 genomes]
rs4771854	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs57786284	0.83[EUR][1000 genomes]
rs59410447	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72636830	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72636832	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72636834	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72636840	0.84[EUR][1000 genomes]
rs7489550	0.80[EUR][1000 genomes]
rs7987741	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9523526	0.80[AMR][1000 genomes]
rs9523535	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9560983	0.83[EUR][1000 genomes]
rs9560984	0.83[EUR][1000 genomes]
rs9560985	0.83[EUR][1000 genomes]
rs9560986	0.83[EUR][1000 genomes]
rs9589454	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv456066	chr13:92694581-92884370	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv562723	chr13:92694581-92884370	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1035365	chr13:92805325-92926114	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1053468	chr13:92814581-92893231	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv456067	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv562726	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92867000-92873600	Weak transcription	Fetal Intestine Large	intestine
2	chr13:92867200-92873800	Weak transcription	Ovary	ovary
3	chr13:92868600-92873800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr13:92870400-92871800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr13:92871000-92871800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr13:92871200-92871800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr13:92871200-92871800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr13:92871200-92872000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr13:92871200-92872000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr13:92871400-92871600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr13:92871400-92871600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr13:92871400-92871800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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