Variant report

Variant	rs10492504
Chromosome Location	chr13:92876421-92876422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1172297	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs1177726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1330978	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap]
rs1330982	1.00[CHB][hapmap]
rs1330983	1.00[CHB][hapmap]
rs1330984	1.00[CHB][hapmap]
rs1330995	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1411747	1.00[CHB][hapmap]
rs1411751	1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap]
rs16947132	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs16947150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16947202	1.00[JPT][hapmap]
rs17267151	1.00[CHB][hapmap]
rs17426071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1819439	1.00[CEU][hapmap]
rs1888545	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2148521	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2182533	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2209651	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4281579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4408406	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4559792	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4771854	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57786284	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59410447	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6650316	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs72636830	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72636831	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72636832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72636834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72636840	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7334533	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7335555	1.00[CEU][hapmap]
rs7336644	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs7489550	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7987741	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7991537	1.00[CHB][hapmap]
rs880546	0.94[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.85[TSI][hapmap]
rs9301781	1.00[CHB][hapmap]
rs9301782	1.00[CHB][hapmap]
rs9523526	1.00[CHB][hapmap];0.88[AMR][1000 genomes]
rs9523535	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9556163	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap]
rs9560982	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.89[MEX][hapmap]
rs9560983	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[GIH][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9560984	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9560985	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9560986	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9560988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap]
rs9589454	1.00[CEU][hapmap];0.81[GIH][hapmap];0.95[MEX][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv456066	chr13:92694581-92884370	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv562723	chr13:92694581-92884370	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1035365	chr13:92805325-92926114	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1053468	chr13:92814581-92893231	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv456067	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv562726	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92873800-92877400	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr13:92874000-92876600	Weak transcription	Fetal Intestine Large	intestine
3	chr13:92874600-92876600	Weak transcription	Fetal Intestine Small	intestine
4	chr13:92874600-92876800	Weak transcription	Ovary	ovary
5	chr13:92875200-92877200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr13:92875800-92877000	Enhancers	NH-A	brain
7	chr13:92876000-92877600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr13:92876200-92877200	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr13:92876200-92877600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr13:92876400-92876800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr13:92876400-92877600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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