Variant report

Variant	rs1172297
Chromosome Location	chr13:92859337-92859338
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10492504	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1177726	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs1330978	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs1330982	1.00[CHB][hapmap]
rs1330983	1.00[CHB][hapmap]
rs1330984	1.00[CHB][hapmap]
rs1330995	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs1411747	1.00[CHB][hapmap]
rs1411751	0.82[CEU][hapmap]
rs16947132	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs16947150	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs17267151	1.00[CHB][hapmap]
rs17426071	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1819439	0.84[CEU][hapmap]
rs1888545	0.82[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2148521	0.84[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs2182533	0.84[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs2209651	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4281579	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4408406	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs4559792	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4771854	0.89[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57786284	0.90[EUR][1000 genomes]
rs59410447	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6650316	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs72636830	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72636831	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72636832	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72636834	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72636840	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7334533	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs7335555	0.83[CEU][hapmap]
rs7336644	1.00[CHB][hapmap]
rs7489550	0.82[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7987741	0.89[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7991537	1.00[CHB][hapmap]
rs880546	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs9301781	1.00[CHB][hapmap]
rs9301782	1.00[CHB][hapmap]
rs9523526	1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9523535	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9556163	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs9560982	1.00[CHB][hapmap]
rs9560983	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs9560984	0.84[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs9560985	0.90[EUR][1000 genomes]
rs9560986	0.84[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs9560988	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs9589440	1.00[JPT][hapmap]
rs9589454	0.82[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv456066	chr13:92694581-92884370	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv562723	chr13:92694581-92884370	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1035365	chr13:92805325-92926114	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1053468	chr13:92814581-92893231	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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