Variant report

Variant	rs9321991
Chromosome Location	chr6:100753769-100753770
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs2224068	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2658151	0.81[ASN][1000 genomes]
rs6929694	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8180552	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9373411	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9376804	1.00[AFR][1000 genomes]
rs9376805	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs9376810	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9376821	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9376845	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9376866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9386059	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9386067	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9390137	1.00[AFR][1000 genomes]
rs9390163	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9390164	0.85[AMR][1000 genomes]
rs9390190	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9399465	1.00[AFR][1000 genomes]
rs9399484	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030316	chr6:100733205-100759678	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
2	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100745200-100755800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:100745600-100753800	Enhancers	HUVEC	blood vessel
3	chr6:100750000-100755000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:100750200-100754800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr6:100751000-100756200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr6:100752400-100753800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:100752600-100753800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:100753000-100753800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:100753200-100753800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr6:100753200-100756000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr6:100753400-100753800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:100753400-100758800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:100753400-100759800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:100753600-100754800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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