Variant report

Variant	rs9399465
Chromosome Location	chr6:100661466-100661467
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs6929694	1.00[AFR][1000 genomes]
rs9321991	1.00[AFR][1000 genomes]
rs9373411	1.00[AFR][1000 genomes]
rs9376796	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9376804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9376805	1.00[AFR][1000 genomes]
rs9376810	1.00[AFR][1000 genomes]
rs9376821	1.00[AFR][1000 genomes]
rs9376845	1.00[AFR][1000 genomes]
rs9376866	1.00[AFR][1000 genomes]
rs9386059	1.00[AFR][1000 genomes]
rs9390137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9390145	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9390146	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752086	chr6:100257279-100675050	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv604260	chr6:100480795-100664839	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv604262	chr6:100661336-100701917	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9399465	SLC10A2	trans	lymphoblastoid	seeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100658400-100665400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:100658800-100662200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:100660400-100666200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:100660800-100664600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:100661200-100665200	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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