Variant report

Variant	rs9373411
Chromosome Location	chr6:100681475-100681476
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs2224068	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6929694	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8180552	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9321991	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9376804	1.00[AFR][1000 genomes]
rs9376805	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9376810	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9376821	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9376845	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9376866	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9386059	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386067	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9390137	1.00[AFR][1000 genomes]
rs9390163	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9390164	0.90[AMR][1000 genomes]
rs9390190	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9399465	1.00[AFR][1000 genomes]
rs9399484	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604262	chr6:100661336-100701917	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv1001991	chr6:100674651-100685935	Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1795039	chr6:100674799-100691977	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100677200-100683600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:100677400-100682600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:100677400-100686800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:100679000-100682600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:100679200-100682200	Weak transcription	Adipose Nuclei	Adipose
6	chr6:100679200-100682400	Weak transcription	A549	lung
7	chr6:100679200-100685000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:100679400-100683400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:100679800-100684600	Enhancers	Fetal Intestine Large	intestine
10	chr6:100680600-100682400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr6:100680800-100682400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr6:100680800-100682800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr6:100681000-100682200	Weak transcription	Liver	Liver
14	chr6:100681000-100682400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:100681000-100682400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:100681200-100682400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr6:100681400-100682600	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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