Variant report

Variant	rs9390137
Chromosome Location	chr6:100651768-100651769
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs6929694	1.00[AFR][1000 genomes]
rs9321991	1.00[AFR][1000 genomes]
rs9373411	1.00[AFR][1000 genomes]
rs9376796	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9376804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9376805	1.00[AFR][1000 genomes]
rs9376810	1.00[AFR][1000 genomes]
rs9376821	1.00[AFR][1000 genomes]
rs9376845	1.00[AFR][1000 genomes]
rs9376866	1.00[AFR][1000 genomes]
rs9386059	1.00[AFR][1000 genomes]
rs9390145	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9390146	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9399465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752086	chr6:100257279-100675050	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv604260	chr6:100480795-100664839	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100650400-100651800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:100650400-100651800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:100650400-100651800	Enhancers	HMEC	breast
4	chr6:100650400-100651800	Enhancers	HSMM	muscle
5	chr6:100650400-100651800	Enhancers	HSMMtube	muscle
6	chr6:100650400-100651800	Enhancers	NHDF-Ad	bronchial
7	chr6:100650400-100651800	Enhancers	NHEK	skin
8	chr6:100650400-100651800	Enhancers	Osteobl	bone
9	chr6:100650400-100652000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:100650400-100652000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:100650400-100652000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:100650800-100651800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:100651000-100652200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:100651000-100652200	Enhancers	Hela-S3	cervix
15	chr6:100651400-100652000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:100651600-100651800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:100651600-100652000	ZNF genes & repeats	A549	lung
18	chr6:100651600-100652000	Enhancers	NHLF	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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