Variant report

Variant	rs9376845
Chromosome Location	chr6:100743929-100743930
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:100737311..100740574-chr6:100740600..100744318,3	K562	blood:
2	chr6:100742755..100744691-chr6:100749750..100751577,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs2224068	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2658151	0.80[ASN][1000 genomes]
rs6929694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8180552	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9321991	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9373411	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9376804	1.00[AFR][1000 genomes]
rs9376805	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9376810	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9376821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9376866	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9386059	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9386067	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9390137	1.00[AFR][1000 genomes]
rs9390163	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9390164	0.90[AMR][1000 genomes]
rs9390190	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9399465	1.00[AFR][1000 genomes]
rs9399484	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030316	chr6:100733205-100759678	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
2	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100731600-100744200	Weak transcription	NHDF-Ad	bronchial
2	chr6:100732000-100744200	Weak transcription	NHLF	lung
3	chr6:100739400-100749600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:100739800-100744200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:100741000-100749600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr6:100741200-100744800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:100741400-100744600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:100741600-100744200	Enhancers	Hela-S3	cervix
9	chr6:100742200-100744200	Weak transcription	Osteobl	bone
10	chr6:100742400-100744200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:100742400-100744600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:100742600-100744200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:100742600-100744800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr6:100742800-100744000	Weak transcription	A549	lung
15	chr6:100743400-100744800	Enhancers	HUVEC	blood vessel
16	chr6:100743800-100744400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:100743800-100744800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:100743800-100745400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:100743800-100745400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:100743800-100745600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:100743800-100746200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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