The 2.0 version of rSNPBase
Home
Search
Document
What's New
Tutorial
Data Content
Download
Feedback
About Us
Variant report
Variant
rs9349245
Chromosome Location
chr6:12512455-12512456
allele
C/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:3)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
(count:3 , 50 per page) page:
1
No.
Transcrition factor
Chromosome Location
Cell Line
Cell type
Cell Stage
Matched TF binding sites
1
FOXA2
chr6:12512151-12512474
HepG2
liver:
n/a
n/a
2
CEBPB
chr6:12511900-12512502
HepG2
liver:
n/a
chr6:12512334-12512345
3
FOXA1
chr6:12512130-12512460
HepG2
liver:
n/a
n/a
No data
No data
No data
No data
No data
Variant related genes
Relation type
RPL15P3
TF binding region
Extended variants information (count: 7 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:7)
rs_ID
r
2
[population]
rs13211009
0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13214464
0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13217076
0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1413513
0.83[AMR][1000 genomes]
rs35802624
0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4714632
0.83[AMR][1000 genomes]
rs9381224
0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links