Variant report

Variant	rs1413513
Chromosome Location	chr6:12504967-12504968
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13199416	0.83[MEX][hapmap]
rs13211009	0.86[CEU][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13214038	0.95[CEU][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13214464	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13217076	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35802624	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4714632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753779	0.86[CHD][hapmap];1.00[JPT][hapmap]
rs7756687	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9349245	0.83[AMR][1000 genomes]
rs9349250	0.91[CEU][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap]
rs9381187	0.82[JPT][hapmap]
rs9381221	0.80[ASN][1000 genomes]
rs9381224	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1413513	PAK1IP1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12492000-12506000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:12502800-12505600	Weak transcription	Brain Germinal Matrix	brain
3	chr6:12503400-12505000	Enhancers	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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