Variant report

Variant	rs7753779
Chromosome Location	chr6:12491467-12491468
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:12289897..12292833-chr6:12490091..12491756,2	MCF-7	breast:
2	chr6:12330604..12333158-chr6:12489739..12491762,2	MCF-7	breast:
3	chr6:12321927..12325444-chr6:12488868..12492076,3	MCF-7	breast:
4	chr6:12478042..12480675-chr6:12489995..12492847,2	K562	blood:
5	chr6:12487571..12490407-chr6:12491253..12493684,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000078401	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10807283	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12200793	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13211009	0.83[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs1413510	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1413511	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1931548	0.82[GIH][hapmap]
rs1999622	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1999623	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2050290	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2327585	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2876273	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35802624	0.94[ASN][1000 genomes]
rs7740778	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7743158	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9296391	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9296392	0.92[EUR][1000 genomes]
rs9296393	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9369371	0.96[ASN][1000 genomes]
rs9381187	0.88[ASW][hapmap];0.89[CHB][hapmap];0.85[CHD][hapmap];0.82[JPT][hapmap];0.92[LWK][hapmap];0.85[MEX][hapmap];0.92[MKK][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9381200	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9381210	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9381221	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9381224	0.94[ASN][1000 genomes]
rs9394914	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9394922	0.81[CEU][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9462831	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9471883	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9471890	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12489400-12492400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr6:12489600-12493000	Enhancers	NHDF-Ad	bronchial
3	chr6:12489800-12492600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:12490000-12492000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:12490000-12492200	Enhancers	NHLF	lung
6	chr6:12490000-12492400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:12490000-12493000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:12490200-12492200	Enhancers	Primary hematopoietic stem cells	blood
9	chr6:12490200-12493200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:12490200-12493600	Enhancers	Hela-S3	cervix
11	chr6:12490400-12491800	Enhancers	Fetal Intestine Small	intestine
12	chr6:12490400-12492000	Enhancers	HSMM	muscle
13	chr6:12490400-12492200	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr6:12490400-12492200	Enhancers	Osteobl	bone
15	chr6:12490400-12493000	Enhancers	Muscle Satellite Cultured Cells	--
16	chr6:12490600-12491600	Enhancers	A549	lung
17	chr6:12490600-12492200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:12490600-12492200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:12490800-12491800	Enhancers	HSMMtube	muscle
20	chr6:12490800-12492000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:12490800-12492000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:12490800-12492000	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr6:12490800-12492000	Enhancers	Spleen	Spleen
24	chr6:12490800-12492000	Enhancers	HMEC	breast
25	chr6:12490800-12492200	Enhancers	NHEK	skin
26	chr6:12491000-12491800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr6:12491200-12491600	Enhancers	NH-A	brain
28	chr6:12491200-12492200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:12491200-12492400	Enhancers	Placenta	Placenta
30	chr6:12491200-12493200	Enhancers	HUVEC	blood vessel
31	chr6:12491400-12491600	Enhancers	Pancreas	Pancrea
32	chr6:12491400-12491600	Enhancers	Sigmoid Colon	Sigmoid Colon
33	chr6:12491400-12491800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr6:12491400-12491800	Enhancers	Aorta	Aorta
35	chr6:12491400-12491800	Enhancers	Rectal Smooth Muscle	rectum
36	chr6:12491400-12491800	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr6:12491400-12491800	Enhancers	Small Intestine	intestine
38	chr6:12491400-12492000	Enhancers	Left Ventricle	heart
39	chr6:12491400-12492000	Enhancers	Placenta Amnion	Placenta Amnion
40	chr6:12491400-12492000	Enhancers	Right Atrium	heart

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