Variant report

Variant	rs9462831
Chromosome Location	chr6:12499322-12499323
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10807283	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12200793	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12208522	0.82[ASN][1000 genomes]
rs12208572	0.82[ASN][1000 genomes]
rs12526847	0.86[ASN][1000 genomes]
rs12530036	0.82[ASN][1000 genomes]
rs13214038	0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs1413510	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1413511	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1999622	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1999623	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2050290	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2327585	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2876273	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7740778	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7743158	0.84[EUR][1000 genomes]
rs7753779	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7756687	0.83[ASN][1000 genomes]
rs9296391	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9296392	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9296393	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9369364	0.82[ASN][1000 genomes]
rs9381193	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9381200	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9381210	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9381221	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9394914	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9394922	0.85[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9471883	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9471890	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12492000-12506000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:12498800-12501800	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links