Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:12479188..12483775-chr6:12485819..12490105,4	K562	blood:
2	chr6:12330412..12331925-chr6:12484463..12486151,2	MCF-7	breast:
3	chr6:12476421..12479146-chr6:12484763..12487337,2	MCF-7	breast:
4	chr6:12484240..12487275-chr6:12491468..12494053,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10807283	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190676	0.82[ASN][1000 genomes]
rs12200793	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13211009	0.88[JPT][hapmap]
rs1413510	0.94[EUR][1000 genomes]
rs1413511	0.94[EUR][1000 genomes]
rs1999622	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1999623	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2050290	0.94[EUR][1000 genomes]
rs2327585	0.94[EUR][1000 genomes]
rs2876273	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35802624	0.92[ASN][1000 genomes]
rs7740778	0.94[EUR][1000 genomes]
rs7753779	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9296391	0.91[EUR][1000 genomes]
rs9296392	0.93[EUR][1000 genomes]
rs9296393	0.94[EUR][1000 genomes]
rs9369371	0.98[ASN][1000 genomes]
rs9381187	0.94[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9381200	0.94[EUR][1000 genomes]
rs9381210	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9381221	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9381224	0.92[ASN][1000 genomes]
rs9394914	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9394922	0.81[CEU][hapmap];0.87[EUR][1000 genomes]
rs9462831	0.84[EUR][1000 genomes]
rs9471883	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9471890	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12482600-12486200	Enhancers	HMEC	breast
2	chr6:12483600-12486600	Enhancers	Placenta Amnion	Placenta Amnion
3	chr6:12484000-12486400	Enhancers	HepG2	liver
4	chr6:12484200-12486200	Enhancers	Hela-S3	cervix
5	chr6:12484400-12486000	Flanking Active TSS	NHEK	skin
6	chr6:12484400-12487200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:12484400-12487600	Weak transcription	Aorta	Aorta
8	chr6:12484400-12489600	Weak transcription	NHDF-Ad	bronchial
9	chr6:12484400-12490000	Weak transcription	NHLF	lung
10	chr6:12484400-12491400	Weak transcription	Small Intestine	intestine
11	chr6:12484600-12486000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:12484600-12486400	Flanking Active TSS	A549	lung
13	chr6:12485000-12486800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:12485000-12489800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:12485000-12490000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:12485200-12490000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:12485400-12486600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:12485400-12487000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:12485800-12488600	Weak transcription	HUVEC	blood vessel

Quick Search: