Variant report

Variant	rs9296391
Chromosome Location	chr6:12475483-12475484
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12474100..12476503-chr6:12487960..12489662,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10807283	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12200793	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208522	0.86[ASN][1000 genomes]
rs12208572	0.86[ASN][1000 genomes]
rs12209939	0.84[ASN][1000 genomes]
rs12213065	0.84[ASN][1000 genomes]
rs12526847	0.91[ASN][1000 genomes]
rs12530036	0.86[ASN][1000 genomes]
rs13214038	0.81[ASN][1000 genomes]
rs1413510	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1413511	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1999622	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1999623	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2050290	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2327585	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2876273	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34199442	0.82[ASN][1000 genomes]
rs7740778	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7743158	0.91[EUR][1000 genomes]
rs7753779	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9296384	0.84[ASN][1000 genomes]
rs9296385	0.84[ASN][1000 genomes]
rs9296386	0.84[ASN][1000 genomes]
rs9296392	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296393	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9369364	0.86[ASN][1000 genomes]
rs9369371	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9381176	0.84[ASN][1000 genomes]
rs9381177	0.84[ASN][1000 genomes]
rs9381180	0.84[ASN][1000 genomes]
rs9381193	0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9381200	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9381210	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9381221	0.84[EUR][1000 genomes]
rs9394898	0.84[ASN][1000 genomes]
rs9394914	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9394922	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9462831	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9471883	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9471890	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9689455	0.84[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12471400-12475600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:12471600-12484800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:12473200-12476600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:12473200-12477000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:12473200-12479600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:12473200-12480200	Weak transcription	Osteobl	bone
7	chr6:12473800-12475600	Enhancers	Pancreas	Pancrea
8	chr6:12474200-12475600	Enhancers	Left Ventricle	heart
9	chr6:12474400-12475600	Enhancers	Liver	Liver
10	chr6:12474400-12475600	Enhancers	Duodenum Mucosa	Duodenum
11	chr6:12474400-12476400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr6:12474600-12475600	Enhancers	Fetal Intestine Large	intestine
13	chr6:12474600-12476800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:12474600-12482400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr6:12474800-12476400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:12474800-12476600	Weak transcription	GM12878-XiMat	blood
17	chr6:12475000-12475600	Enhancers	Fetal Intestine Small	intestine
18	chr6:12475000-12480800	Weak transcription	A549	lung
19	chr6:12475000-12482000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:12475000-12482600	Weak transcription	HMEC	breast
21	chr6:12475200-12476000	Enhancers	Stomach Mucosa	stomach
22	chr6:12475200-12476600	Weak transcription	Right Ventricle	heart
23	chr6:12475400-12478400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr6:12475400-12483400	Weak transcription	Aorta	Aorta

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