Variant report

Variant	rs9296392
Chromosome Location	chr6:12476696-12476697
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12293675..12296449-chr6:12475977..12478755,2	MCF-7	breast:
2	chr6:12476421..12479146-chr6:12484763..12487337,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10807283	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12200793	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208522	0.86[ASN][1000 genomes]
rs12208572	0.86[ASN][1000 genomes]
rs12209939	0.84[ASN][1000 genomes]
rs12213065	0.84[ASN][1000 genomes]
rs12526847	0.91[ASN][1000 genomes]
rs12530036	0.86[ASN][1000 genomes]
rs13214038	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1413510	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1413511	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1999622	0.93[EUR][1000 genomes]
rs1999623	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2050290	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2327585	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2876273	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34199442	0.82[ASN][1000 genomes]
rs7740778	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7743158	0.93[EUR][1000 genomes]
rs7753779	0.85[CEU][hapmap];0.92[EUR][1000 genomes]
rs9296384	0.84[ASN][1000 genomes]
rs9296385	0.84[ASN][1000 genomes]
rs9296386	0.84[ASN][1000 genomes]
rs9296391	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296393	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9369364	0.86[ASN][1000 genomes]
rs9369371	0.83[AMR][1000 genomes]
rs9381176	0.84[ASN][1000 genomes]
rs9381177	0.84[ASN][1000 genomes]
rs9381180	0.84[ASN][1000 genomes]
rs9381193	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9381200	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9381210	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9381221	0.86[EUR][1000 genomes]
rs9394898	0.84[ASN][1000 genomes]
rs9394914	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9394922	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9462831	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9471883	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9471890	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9689455	0.84[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12471600-12484800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:12473200-12477000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:12473200-12479600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:12473200-12480200	Weak transcription	Osteobl	bone
5	chr6:12474600-12476800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:12474600-12482400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:12475000-12480800	Weak transcription	A549	lung
8	chr6:12475000-12482000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:12475000-12482600	Weak transcription	HMEC	breast
10	chr6:12475400-12478400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr6:12475400-12483400	Weak transcription	Aorta	Aorta
12	chr6:12475600-12482400	Weak transcription	Fetal Intestine Large	intestine
13	chr6:12475600-12482800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:12476000-12483600	Weak transcription	Stomach Mucosa	stomach
15	chr6:12476400-12477400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:12476600-12476800	Enhancers	H9 Cell Line	embryonic stem cell
17	chr6:12476600-12476800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:12476600-12476800	Enhancers	Left Ventricle	heart
19	chr6:12476600-12476800	Enhancers	Right Ventricle	heart
20	chr6:12476600-12476800	Enhancers	GM12878-XiMat	blood
21	chr6:12476600-12477000	Enhancers	Primary B cells from peripheral blood	blood

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