Variant report

Variant	rs12213065
Chromosome Location	chr6:12468072-12468073
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12190676	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12200793	0.84[ASN][1000 genomes]
rs12208522	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12208572	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12209939	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12526847	0.92[ASN][1000 genomes]
rs12530036	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13214038	0.89[JPT][hapmap]
rs1413510	0.84[ASN][1000 genomes]
rs1413511	0.84[ASN][1000 genomes]
rs1999622	0.83[AMR][1000 genomes]
rs1999623	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2050290	0.82[ASN][1000 genomes]
rs2327585	0.84[ASN][1000 genomes]
rs34199442	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7740778	0.82[ASN][1000 genomes]
rs9296384	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296385	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296386	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296391	0.84[ASN][1000 genomes]
rs9296392	0.84[ASN][1000 genomes]
rs9296393	0.84[ASN][1000 genomes]
rs9369364	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9381176	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9381177	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9381180	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9381187	1.00[CEU][hapmap];0.84[GIH][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9381193	0.82[ASN][1000 genomes]
rs9381200	0.84[ASN][1000 genomes]
rs9381210	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9394898	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394914	0.83[ASN][1000 genomes]
rs9394922	0.86[CHB][hapmap];0.82[CHD][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs9689455	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv970310	chr6:12462217-12471915	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12459200-12474000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:12468000-12468800	Enhancers	Aorta	Aorta
3	chr6:12468000-12468800	Enhancers	HMEC	breast
4	chr6:12468000-12469000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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