Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12290193..12292493-chr6:12469740..12471285,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000078401	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10807283	0.85[ASN][1000 genomes]
rs12190676	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12208522	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12208572	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12209939	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12213065	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12530036	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1999622	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2876273	0.85[ASN][1000 genomes]
rs34199442	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7743158	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7753779	0.88[ASW][hapmap];0.89[CHB][hapmap];0.85[CHD][hapmap];0.82[JPT][hapmap];0.92[LWK][hapmap];0.85[MEX][hapmap];0.92[MKK][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9296384	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9296385	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9296386	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9369364	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9369371	0.85[ASN][1000 genomes]
rs9381171	0.85[ASN][1000 genomes]
rs9381176	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9381177	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9381180	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9381210	0.81[AMR][1000 genomes]
rs9381221	0.82[ASN][1000 genomes]
rs9394898	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9471883	0.85[ASN][1000 genomes]
rs9471890	0.85[ASN][1000 genomes]
rs9689455	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv970310	chr6:12462217-12471915	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12459200-12474000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:12468600-12471400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:12468600-12472000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:12468600-12472200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:12468600-12472800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:12468600-12474000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:12468800-12471400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:12468800-12471800	Weak transcription	Aorta	Aorta
9	chr6:12468800-12472000	Weak transcription	Colon Smooth Muscle	Colon
10	chr6:12468800-12472000	Weak transcription	HMEC	breast
11	chr6:12468800-12472000	Weak transcription	NHEK	skin
12	chr6:12471000-12471600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:12471000-12471600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:12471000-12471800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:12471000-12473000	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr6:12471200-12472600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:12471200-12472600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:12471200-12475000	Enhancers	A549	lung

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