Variant report

Variant	rs9369364
Chromosome Location	chr6:12470603-12470604
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12290193..12292493-chr6:12469740..12471285,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000078401	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12190676	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12200793	0.86[ASN][1000 genomes]
rs12208522	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208572	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12213065	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12526847	0.95[ASN][1000 genomes]
rs12530036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1413510	0.86[ASN][1000 genomes]
rs1413511	0.86[ASN][1000 genomes]
rs1999622	0.83[AMR][1000 genomes]
rs1999623	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2050290	0.85[ASN][1000 genomes]
rs2327585	0.86[ASN][1000 genomes]
rs34199442	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7740778	0.85[ASN][1000 genomes]
rs9296384	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9296385	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9296386	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9296391	0.86[ASN][1000 genomes]
rs9296392	0.86[ASN][1000 genomes]
rs9296393	0.86[ASN][1000 genomes]
rs9381176	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9381177	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9381180	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9381187	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9381193	0.85[ASN][1000 genomes]
rs9381200	0.86[ASN][1000 genomes]
rs9381210	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9394898	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9394914	0.86[ASN][1000 genomes]
rs9394922	0.83[ASN][1000 genomes]
rs9462831	0.82[ASN][1000 genomes]
rs9689455	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv970310	chr6:12462217-12471915	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12459200-12474000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:12468600-12471400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:12468600-12472000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:12468600-12472200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:12468600-12472800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:12468600-12474000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:12468800-12471400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:12468800-12471800	Weak transcription	Aorta	Aorta
9	chr6:12468800-12472000	Weak transcription	Colon Smooth Muscle	Colon
10	chr6:12468800-12472000	Weak transcription	HMEC	breast
11	chr6:12468800-12472000	Weak transcription	NHEK	skin
12	chr6:12469000-12471000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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