Variant report

Variant	rs1999623
Chromosome Location	chr6:12489065-12489066
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:12474100..12476503-chr6:12487960..12489662,2	MCF-7	breast:
2	chr6:12479188..12483775-chr6:12485819..12490105,4	K562	blood:
3	chr6:12487571..12490407-chr6:12491253..12493684,2	MCF-7	breast:
4	chr6:12321927..12325444-chr6:12488868..12492076,3	MCF-7	breast:
5	chr6:12488883..12490897-chr6:12492872..12495577,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10807283	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12200793	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12208522	0.85[ASN][1000 genomes]
rs12208572	0.85[ASN][1000 genomes]
rs12209939	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12213065	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12526847	0.89[ASN][1000 genomes]
rs12530036	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13214038	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1413510	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1413511	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1999622	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2050290	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2327585	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2876273	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34199442	0.81[ASN][1000 genomes]
rs7740778	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7743158	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7753779	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7756687	0.80[ASN][1000 genomes]
rs9296384	0.82[ASN][1000 genomes]
rs9296385	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9296386	0.82[ASN][1000 genomes]
rs9296391	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9296392	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9296393	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9369364	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9381176	0.82[ASN][1000 genomes]
rs9381177	0.82[ASN][1000 genomes]
rs9381180	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9381193	0.95[ASN][1000 genomes]
rs9381200	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9381210	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9381221	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9394898	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9394914	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9394922	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9462831	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9471883	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9471890	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9689455	0.82[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12484400-12489600	Weak transcription	NHDF-Ad	bronchial
2	chr6:12484400-12490000	Weak transcription	NHLF	lung
3	chr6:12484400-12491400	Weak transcription	Small Intestine	intestine
4	chr6:12485000-12489800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:12485000-12490000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:12485200-12490000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:12486000-12490800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:12486200-12490200	Weak transcription	Hela-S3	cervix
9	chr6:12486200-12490800	Weak transcription	HMEC	breast
10	chr6:12486600-12491400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr6:12487200-12490600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:12487200-12490800	Weak transcription	NHEK	skin
13	chr6:12487400-12490000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:12487600-12489800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:12487800-12490400	Enhancers	A549	lung
16	chr6:12488000-12491400	Weak transcription	Aorta	Aorta
17	chr6:12488200-12490800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:12488800-12489200	Weak transcription	HUVEC	blood vessel
19	chr6:12488800-12490800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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