Variant report
| Variant | rs13214038 |
|---|---|
| Chromosome Location | chr6:12508571-12508572 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:12290568..12293455-chr6:12507414..12508928,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000078401 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs12200793 | 0.81[ASN][1000 genomes] |
| rs13211009 | 0.89[AMR][1000 genomes] |
| rs13214464 | 0.86[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs1413510 | 0.81[ASN][1000 genomes] |
| rs1413511 | 0.81[ASN][1000 genomes] |
| rs1413513 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs1999623 | 0.82[ASN][1000 genomes] |
| rs2327585 | 0.81[ASN][1000 genomes] |
| rs4714632 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7756687 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9296391 | 0.81[ASN][1000 genomes] |
| rs9296392 | 0.81[ASN][1000 genomes] |
| rs9296393 | 0.81[ASN][1000 genomes] |
| rs9349250 | 0.85[CEU][hapmap] |
| rs9381200 | 0.81[ASN][1000 genomes] |
| rs9381210 | 0.81[ASN][1000 genomes] |
| rs9394914 | 0.80[ASN][1000 genomes] |
| rs9394922 | 1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs9462831 | 0.85[ASN][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
