Variant report

Variant	rs9381200
Chromosome Location	chr6:12478197-12478198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:12478042..12480675-chr6:12489995..12492847,2	K562	blood:
2	chr6:12293675..12296449-chr6:12475977..12478755,2	MCF-7	breast:
3	chr6:12476421..12479146-chr6:12484763..12487337,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10807283	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12200793	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208522	0.86[ASN][1000 genomes]
rs12208572	0.86[ASN][1000 genomes]
rs12209939	0.84[ASN][1000 genomes]
rs12213065	0.84[ASN][1000 genomes]
rs12526847	0.91[ASN][1000 genomes]
rs12530036	0.86[ASN][1000 genomes]
rs13214038	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1413510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1413511	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1999622	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1999623	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2050290	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2327585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2876273	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34199442	0.82[ASN][1000 genomes]
rs7740778	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7743158	0.94[EUR][1000 genomes]
rs7753779	0.87[CEU][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9296384	0.84[ASN][1000 genomes]
rs9296385	0.84[ASN][1000 genomes]
rs9296386	0.84[ASN][1000 genomes]
rs9296391	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296392	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296393	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9369364	0.86[ASN][1000 genomes]
rs9369371	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9381176	0.84[ASN][1000 genomes]
rs9381177	0.84[ASN][1000 genomes]
rs9381180	0.84[ASN][1000 genomes]
rs9381193	0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9381210	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9381221	0.87[EUR][1000 genomes]
rs9394898	0.84[ASN][1000 genomes]
rs9394914	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9394922	0.94[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9462831	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9471883	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9471890	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9689455	0.84[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9381200	PAK1IP1	cis	cerebellum	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12471600-12484800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:12473200-12479600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:12473200-12480200	Weak transcription	Osteobl	bone
4	chr6:12474600-12482400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:12475000-12480800	Weak transcription	A549	lung
6	chr6:12475000-12482000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:12475000-12482600	Weak transcription	HMEC	breast
8	chr6:12475400-12478400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:12475400-12483400	Weak transcription	Aorta	Aorta
10	chr6:12475600-12482400	Weak transcription	Fetal Intestine Large	intestine
11	chr6:12475600-12482800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:12476000-12483600	Weak transcription	Stomach Mucosa	stomach
13	chr6:12477200-12482200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:12477200-12482600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:12477400-12479600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:12477400-12480200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:12477800-12481000	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links