Variant report

Variant	rs12530036
Chromosome Location	chr6:12468745-12468746
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12190676	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12200793	0.86[ASN][1000 genomes]
rs12208522	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208572	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12213065	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12526847	0.95[ASN][1000 genomes]
rs1413510	0.86[ASN][1000 genomes]
rs1413511	0.86[ASN][1000 genomes]
rs1999622	0.83[AMR][1000 genomes]
rs1999623	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2050290	0.85[ASN][1000 genomes]
rs2327585	0.86[ASN][1000 genomes]
rs34199442	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7740778	0.85[ASN][1000 genomes]
rs9296384	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9296385	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9296386	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9296391	0.86[ASN][1000 genomes]
rs9296392	0.86[ASN][1000 genomes]
rs9296393	0.86[ASN][1000 genomes]
rs9369364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9381176	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9381177	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9381180	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9381187	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9381193	0.85[ASN][1000 genomes]
rs9381200	0.86[ASN][1000 genomes]
rs9381210	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9394898	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9394914	0.86[ASN][1000 genomes]
rs9394922	0.83[ASN][1000 genomes]
rs9462831	0.82[ASN][1000 genomes]
rs9689455	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv970310	chr6:12462217-12471915	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12459200-12474000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:12468000-12468800	Enhancers	Aorta	Aorta
3	chr6:12468000-12468800	Enhancers	HMEC	breast
4	chr6:12468000-12469000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr6:12468200-12468800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:12468200-12468800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:12468200-12468800	Enhancers	Colon Smooth Muscle	Colon
8	chr6:12468400-12468800	Enhancers	NHEK	skin
9	chr6:12468600-12471400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:12468600-12472000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:12468600-12472200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:12468600-12472800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:12468600-12474000	Weak transcription	H9 Cell Line	embryonic stem cell

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