Variant report

Variant	rs9394922
Chromosome Location	chr6:12494502-12494503
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12488883..12490897-chr6:12492872..12495577,2	MCF-7	breast:
2	chr6:12289461..12292392-chr6:12493007..12495843,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000078401	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10807283	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12200793	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12208522	0.83[ASN][1000 genomes]
rs12208572	0.83[ASN][1000 genomes]
rs12209939	0.80[ASN][1000 genomes]
rs12213065	0.80[ASN][1000 genomes]
rs12526847	0.87[ASN][1000 genomes]
rs12530036	0.83[ASN][1000 genomes]
rs13214038	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1413510	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1413511	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1999622	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1999623	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2050290	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2327585	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2876273	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7740778	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7743158	0.87[EUR][1000 genomes]
rs7753779	0.81[CEU][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7756687	0.81[ASN][1000 genomes]
rs9296384	0.80[ASN][1000 genomes]
rs9296385	0.80[ASN][1000 genomes]
rs9296386	0.80[ASN][1000 genomes]
rs9296391	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9296392	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9296393	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9369364	0.83[ASN][1000 genomes]
rs9381176	0.80[ASN][1000 genomes]
rs9381177	0.80[ASN][1000 genomes]
rs9381180	0.80[ASN][1000 genomes]
rs9381193	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9381200	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9381210	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9381221	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9394898	0.80[ASN][1000 genomes]
rs9394914	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9462831	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9471883	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9471890	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9689455	0.80[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9394922	PAK1IP1	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12491800-12494600	Weak transcription	Pancreas	Pancrea
2	chr6:12492000-12506000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:12494200-12494800	Enhancers	Spleen	Spleen
4	chr6:12494400-12494600	Weak transcription	A549	lung

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