Variant report

Variant	rs9471883
Chromosome Location	chr6:12479253-12479254
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12479188..12483775-chr6:12485819..12490105,4	K562	blood:
2	chr6:12478042..12480675-chr6:12489995..12492847,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10807283	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12190676	0.82[ASN][1000 genomes]
rs12200793	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13211009	0.88[JPT][hapmap]
rs1413510	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1413511	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1999622	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1999623	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2050290	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2327585	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2876273	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35802624	0.91[ASN][1000 genomes]
rs7740778	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7743158	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7753779	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9296391	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9296392	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9296393	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9369371	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9381187	0.94[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs9381193	0.92[AMR][1000 genomes]
rs9381200	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9381210	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9381221	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9381224	0.91[ASN][1000 genomes]
rs9394914	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9394922	0.94[CEU][hapmap];0.95[GIH][hapmap];0.90[MEX][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9462831	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9471890	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12471600-12484800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:12473200-12479600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:12473200-12480200	Weak transcription	Osteobl	bone
4	chr6:12474600-12482400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:12475000-12480800	Weak transcription	A549	lung
6	chr6:12475000-12482000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:12475000-12482600	Weak transcription	HMEC	breast
8	chr6:12475400-12483400	Weak transcription	Aorta	Aorta
9	chr6:12475600-12482400	Weak transcription	Fetal Intestine Large	intestine
10	chr6:12475600-12482800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:12476000-12483600	Weak transcription	Stomach Mucosa	stomach
12	chr6:12477200-12482200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:12477200-12482600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr6:12477400-12479600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:12477400-12480200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:12477800-12481000	Enhancers	HUVEC	blood vessel
17	chr6:12478400-12479800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:12478400-12479800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:12479200-12480000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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